Find here a list of links to relevant resources.

• Data repo

• Course webpage

• Main website

• Github organization

• 2019 Paper describing species tree model

• PHAST: various phylogenetic sequence methods (including phastCons for identifying conserved elements and phyloFit for estimating neutral substitution rates)

• Description of how phylogenetic discordance can influence estimates of substitution rates (Mendes & Hahn 2016)

• Concordance factors (Minh et al. 2020)

• Convergent evolution in marine mammal protein coding genes (Foote et al. 2015)

• Another study on convergent evolution in marine mammal genomes (Chikina et al. 2016)

• BPP: More on Bayesian phylogenetics (Flouri et al. 2016)

• General review of methods to detect selection in the genome (Booker et al. 2017)

• Gregg Thomas - Bioinformatics Scientist at Harvard University